Species range maps (SRMs) are essential tools for research and policy-making in ecology, conservation, and environmental management.

Science Archaeology World's oldest poison-tipped arrow discovered in South Africa The 60,000-year-old relic contains traces of a toxic onion. Breakthroughs, discoveries, and DIY tips sent every weekday. For thousands of years, hunters around the world have employed poison-tipped arrows to assist in taking down prey. For example, the curare plant poisons used by South and Central American hunters paralyzes the respiratory system. Meanwhile, inhabitants of the Kalahari Desert have relied on the toxins harvested from beetle larvae .

Species range maps (SRMs) are essential tools for research and policy-making in ecology, conservation, and environmental management.

Prompt engineering is crucial for leveraging the full potential of large language models (LLMs). While automatic prompt optimization offers a scalable alternative to costly manual design, generating effective prompts remains challenging. Existing methods often struggle to stably generate improved prompts, leading to low efficiency, and overlook that prompt optimization easily gets trapped in local optima. Addressing this, we propose GRACE, a framework that integrates two synergistic strategies: Gated Refinement and Adaptive Compression, achieving Efficient prompt optimization. The gated refinement strategy introduces a feedback regulation gate and an update rejection gate, which refine update signals to produce stable and effective prompt improvements. When optimization stagnates, the adaptive compression strategy distills the prompt's core concepts, restructuring the optimization trace and opening new paths. By strategically introducing information loss through refinement and compression, GRACE delivers substantial gains in performance and efficiency. In extensive experiments on 11 tasks across three practical domains, including BIG-Bench Hard (BBH), domain-specific, and general NLP tasks, GRACE achieves significant average relative performance improvements of 4.7%, 4.4% and 2.7% over state-of-the-art methods, respectively. Further analysis shows that GRACE achieves these gains using only 25% of the prompt generation budget required by prior methods, highlighting its high optimization efficiency and low computational overhead. Our code is available at https://github.com/Eric8932/GRACE.

Recent advances in word embeddings and language models use large-scale, unlabelled data and self-supervised learning to boost NLP performance. Multilingual models, often trained on web-sourced data like Wikipedia, face challenges: few low-resource languages are included, their data is often noisy, and lack of labeled datasets makes it hard to evaluate performance outside high-resource languages like English. In this dissertation, we focus on languages spoken in Sub-Saharan Africa where all the indigenous languages in this region can be regarded as low-resourced in terms of the availability of labelled data for NLP tasks and unlabelled data found on the web. We analyse the noise in the publicly available corpora, and curate a high-quality corpus, demonstrating that the quality of semantic representations learned in word embeddings does not only depend on the amount of data but on the quality of pre-training data. We demonstrate empirically the limitations of word embeddings, and the opportunities the multilingual pre-trained language model (PLM) offers especially for languages unseen during pre-training and low-resource scenarios. We further study how to adapt and specialize multilingual PLMs to unseen African languages using a small amount of monolingual texts. To address the under-representation of the African languages in NLP research, we developed large scale human-annotated labelled datasets for 21 African languages in two impactful NLP tasks: named entity recognition and machine translation. We conduct an extensive empirical evaluation using state-of-the-art methods across supervised, weakly-supervised, and transfer learning settings.

Large language models (LLMs) have demonstrated enhanced performance through the \textit{Thinking then Responding} paradigm, where models generate internal thoughts before final responses (aka, System 2 thinking). However, existing research lacks a systematic understanding of the mechanisms underlying how thinking patterns affect performance across model sizes. In this work, we conduct a comprehensive analysis of the impact of various thinking types on model performance and introduce ThinkPatterns-21k, a curated dataset comprising 21k instruction-response pairs (QA) collected from existing instruction-following datasets with five thinking types. For each pair, we augment it with five distinct internal thinking patterns: one unstructured thinking (monologue) and four structured variants (decomposition, self-ask, self-debate and self-critic), while maintaining the same instruction and response. Through extensive evaluation across different model sizes (3B-32B parameters), we have two key findings: (1) smaller models (<30B parameters) can benefit from most of structured thinking patterns, while larger models (32B) with structured thinking like decomposition would degrade performance and (2) unstructured monologue demonstrates broad effectiveness across different model sizes. Finally, we released all of our datasets, checkpoints, training logs of diverse thinking patterns to reproducibility, aiming to facilitate further research in this direction.

Species range maps (SRMs) are essential tools for research and policy-making in ecology, conservation, and environmental management. However, traditional SRMs rely on the availability of environmental covariates and high-quality species location observation data, both of which can be challenging to obtain due to geographic inaccessibility and resource constraints. We propose a novel approach combining millions of citizen science species observations with textual descriptions from Wikipedia, covering habitat preferences and range descriptions for tens of thousands of species. Our framework maps locations, species, and text descriptions into a common space, facilitating the learning of rich spatial covariates at a global scale and enabling zero-shot range estimation from textual descriptions. Evaluated on held-out species, our zero-shot SRMs significantly outperform baselines and match the performance of SRMs obtained using tens of observations. Our approach also acts as a strong prior when combined with observational data, resulting in more accurate range estimation with less data. We present extensive quantitative and qualitative analyses of the learned representations in the context of range estimation and other spatial tasks, demonstrating the effectiveness of our approach.

Savannahs are vital ecosystems whose sustainability is endangered by the spread of woody plants. This research targets the accurate mapping of fractional woody cover (FWC) at the species level in a South African savannah, using EnMAP hyperspectral data. Field annotations were combined with very high-resolution multispectral drone data to produce land cover maps that included three woody species. The high-resolution labelled maps were then used to generate FWC samples for each woody species class at the 30-m spatial resolution of EnMAP. Four machine learning regression algorithms were tested for FWC mapping on dry season EnMAP imagery. The contribution of multitemporal information was also assessed by incorporating as additional regression features, spectro-temporal metrics from Sentinel-2 data of both the dry and wet seasons. The results demonstrated the suitability of our approach for accurately mapping FWC at the species level. The highest accuracy rates achieved from the combined EnMAP and Sentinel-2 experiments highlighted their synergistic potential for species-level vegetation mapping.

Viewing Transformers as interacting particle systems, we describe the geometry of learned representations when the weights are not time dependent. We show that particles, representing tokens, tend to cluster toward particular limiting objects as time tends to infinity. Cluster locations are determined by the initial tokens, confirming context-awareness of representations learned by Transformers. Using techniques from dynamical systems and partial differential equations, we show that the type of limiting object that emerges depends on the spectrum of the value matrix. Additionally, in the one-dimensional case we prove that the self-attention matrix converges to a low-rank Boolean matrix. The combination of these results mathematically confirms the empirical observation made by Vaswani et al. [VSP'17] that leaders appear in a sequence of tokens when processed by Transformers.

Measures of rank correlation are commonly used in statistics to capture the degree of concordance between two orderings of the same set of items. Standard measures like Kendall's tau and Spearman's rho coefficient put equal emphasis on each position of a ranking. Yet, motivated by applications in which some of the positions (typically those on the top) are more important than others, a few weighted variants of these measures have been proposed. Most of these generalizations fail to meet desirable formal properties, however. Besides, they are often quite inflexible in the sense of committing to a fixed weighing scheme. In this paper, we propose a weighted rank correlation measure on the basis of fuzzy order relations. Our measure, called scaled gamma, is related to Goodman and Kruskal's gamma rank correlation. It is parametrized by a fuzzy equivalence relation on the rank positions, which in turn is specified conveniently by a so-called scaling function. This approach combines soundness with flexibility: it has a sound formal foundation and allows for weighing rank positions in a flexible way.